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Description Schematic of continent map with marked locations of P. bekefii 16S rRNA gene sequence blastn hits.
Article Title: 100‐year‐old enigma solved: identification, genomic characterization and biogeography of the yet uncultured Planctomyces bekefii
Publication Title: Environmental Microbiology -
Description Location and layout of the sampling site, showing perturbed (cattle grazing) and unperturbed (no cattle) sites. Samples were taken at four different time points corresponding to winter, spring,...
Article Title: Grazing affects methanotroph activity and diversity in an alpine meadow soil
Publication Title: Environmental Microbiology Reports -
Description Correlations between (A) macroinvertebrate‐based biotic index and % developed and (B) sediment Zn concentration and % developed. The points are coloured by their % unforested or % developed values...
Article Title: In search of microbial indicator taxa: shifts in stream bacterial communities along an urbanization gradient
Publication Title: Environmental Microbiology -
Description PMQR genes in quinolone‐resistant urinary tract E. coli from Chile and USA
Article Title: Antimicrobial resistance genes in marine bacteria and human uropathogenic Escherichia coli from a region of intensive aquaculture
Publication Title: Environmental Microbiology Reports -
Description The crystal structure of SadC GGDEF domain and its DGC activity. A. Crystal structure of SadC323–487 (left), SadC300–487 hexamer (middle) and SadC300–487 monomer (right). The α‐helix formed by...
Article Title: Membrane association of SadC enhances its diguanylate cyclase activity to control exopolysaccharides synthesis and biofilm formation in Pseudomonas aeruginosa
Publication Title: Environmental Microbiology -
Description . Strains and plasmids used in this study.
Article Title: Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis
Publication Title: Environmental Microbiology -
Description Thin section transmission electron micrograph. Representative spore produced at 25, 37 or 42°C are reported. Triangles (left panel) point to sites of detachment between inner and outer coat. Bars...
Article Title: Bacillus subtilis builds structurally and functionally different spores in response to the temperature of growth
Publication Title: Environmental Microbiology -
Description Succinate and glycine secretion caused by isocitrate lyase activity increases non‐replicating survival. A. 10 top hits of predicted metabolic pathways leading to succinate secretion. The numbers...
Article Title: Dynamic exometabolome analysis reveals active metabolic pathways in non‐replicating mycobacteria
Publication Title: Environmental Microbiology -
Description (A) Number of sequences (without singletons; in cursive) and percentages of fungal molecular operational taxonomic units (MOTUs) by type of sample: root tips (RT) and bulk soil (BS), region: Gu =...
Article Title: Compartmentalized and contrasted response of ectomycorrhizal and soil fungal communities of Scots pine forests along elevation gradients in France and Spain
Publication Title: Environmental Microbiology -
Description Production of DVU2956, DVU2960, DVU2962, and DVU2964 inhibits D. vulgaris biofilm formation and DVU2956 inhibits D. desulfuricans biofilm formation. DVU2956, DVU2960, DVU2961, DVU2962, and DVU2964...
Article Title: σ54‐Dependent regulator DVU2956 switches Desulfovibrio vulgaris from biofilm formation to planktonic growth and regulates hydrogen sulfide production
Publication Title: Environmental Microbiology -
Description A. Gel electrophoresis of RT‐PCR products amplified from cDNA from G. margarita germinating spores (1) with the following primer pairs specific for the putative viral sequences: 33086genF1 and...
Article Title: The virome of the arbuscular mycorrhizal fungus Gigaspora margarita reveals the first report of DNA fragments corresponding to replicating non‐retroviral RNA viruses in fungi
Publication Title: Environmental Microbiology -
Description Assessment of turgor pressure and cell wall integrity. A. Cytorrhysis assay for appressorium turgor pressure. Drops of conidial suspension (2 × 104 conidia ml−1) were placed on the hydrophobic...
Article Title: Role of the MoYAK1 protein kinase gene in Magnaporthe oryzae development and pathogenicity
Publication Title: Environmental Microbiology -
Description Diversity index (A) and principal coordinate analysis (PCoA) (B) of the bacterial communities based on the OTUs of the 16S rRNA gene from the treatments in Incubation II. N, original soil; O,...
Article Title: Organic carbon availability limiting microbial denitrification in the deep vadose zone
Publication Title: Environmental Microbiology -
Description Effect of Fe(II) levels on the expression of fur, ideR, feoB and the housekeeping gene, rpoD in chemostat cultures of G. sulfurreducens. Concentration of mRNA was determined by quantitative RT‐PCR...
Article Title: Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation
Publication Title: Environmental Microbiology -
Description Time‐course of the residual glucose concentration in glucose‐limited continuous cultures of E. coli K12 operated at D = 0.3 h−1. Data for four independent runs are shown.
Article Title: Short‐ and long‐term changes in proteome composition and kinetic properties in a culture of Escherichia coli during transition from glucose‐excess to glucose‐limited growth conditions in continuous culture and vice versa
Publication Title: Environmental Microbiology -
Description Diversity and abundance of cultivable bacterial genera isolated from field‐grown B. napus. Diagrams Rmean, Smean and Lmean summarize the mean abundance of each genus isolated from the three root,...
Article Title: Characterization of the cultivable bacterial populations associated with field grown Brassica napus L.: an evaluation of sampling and isolation protocols
Publication Title: Environmental Microbiology -
Description AMT15 cruise track. Letters A–G mark the position of stations representing the different oceanic regions analysed in this study. A – northern coastal, B – northern temperate, C – northern gyre, D –...
Article Title: Basin‐scale distribution patterns of picocyanobacterial lineages in the Atlantic Ocean
Publication Title: Environmental Microbiology -
Description Table
Article Title: NanoSIMS sample preparation decreases isotope enrichment: magnitude, variability and implications for single‐cell rates of microbial activity
Publication Title: Environmental Microbiology -
Description MsCAD1 expression profiles. A. MsCAD1 expression varies over instars. B. MsCAD1 expression is highest in midgut. Each histogram bar represents the mean ± SEM relative MsCAD1 expression in the...
Article Title: A cadherin‐like protein influences Bacillus thuringiensis Cry1Ab toxicity in the oriental armyworm, Mythimna separata
Publication Title: Environmental Microbiology ReportsThematic Issue: Plant‐Microbe Interactions -
Description Function of the HdrABC‐MvhADG and HdrABC‐FlxABCD complexes. A. In the last step of methanogenesis, the MvhADG hydrogenase–HdrABC complex uses H2 to reduce both the heterodisulfide and Fdox using...
Article Title: The FlxABCD‐HdrABC proteins correspond to a novel NADH dehydrogenase/heterodisulfide reductase widespread in anaerobic bacteria and involved in ethanol metabolism in Desulfovibrio vulgaris Hildenborough
Publication Title: Environmental Microbiology -
Description Phylogenetic relationships of 16S rRNA sequences of bacteria (A) and archaea (B) as determined by Maximum‐Likelihood analysis. The percentage of bootstrap re‐samplings above 50% is indicated....
Article Title: Microbial CO2 fixation and sulfur cycling associated with low‐temperature emissions at the Lilliput hydrothermal field, southern Mid‐Atlantic Ridge (9°S)
Publication Title: Environmental Microbiology -
Description XANES spectrum of the snottite material compared with reference spectra of compounds with sulfur in variable oxidation states.
Article Title: Matrix composition and community structure analysis of a novel bacterial pyrite leaching community
Publication Title: Environmental Microbiology -
Description Overview of the proteome profile of T. maritima in oxygenated conditions as obtained by 2‐DE gels. Proteins (100 μg) were separated by two‐dimensional gel electrophoresis in the pH gradients 4–7...
Article Title: The hyperthermophilic anaerobe Thermotoga Maritima is able to cope with limited amount of oxygen: insights into its defence strategies
Publication Title: Environmental Microbiology -
Description Conceptual model of the field‐based selenium bioreduction and sequestration process. A. Acetate is injected into aquifer and circulated between multiple injection wells using cross‐well mixing...
Article Title: Field evidence of selenium bioreduction in a uranium‐contaminated aquifer
Publication Title: Environmental Microbiology ReportsThematic Issue: Plant‐Microbe Interactions -
Description The average number of E. coli strains identified from an animal with varying numbers of samples collected.
Article Title: High temporal variability in commensal Escherichia coli strain communities of a herbivorous marsupial
Publication Title: Environmental Microbiology -
Description Strategy for the transcriptional regulation of bacterial nitrate respiration genes (narGHJI or narK2) under anaerobic or microaerobic conditions. A. Regulation by anaerobic induction without direct...
Article Title: Sensing of O2 and nitrate by bacteria: alternative strategies for transcriptional regulation of nitrate respiration by O2 and nitrate
Publication Title: Environmental Microbiology -
Description β‐Galactosidase activity of the ipdC–lacZ fusion from the A. brasilense SM variant strain SMΔpMEi3LF (grey bars) expressing lacZ from PipdC on ΔpMEK24 and its derivative, SMi3LFiC‐A6 (black bars)...
Article Title: Organization of the ipdC region regulates IAA levels in different Azospirillum brasilense strains: molecular and functional analysis of ipdC in strain SM
Publication Title: Environmental Microbiology -
Description Bray–Curtis dissimilarity based cluster analyses showing the relationship between plots at the alpine (A) and arctic (B) sites.
Article Title: Primary succession of Bistorta vivipara (L.) Delabre (Polygonaceae) root‐associated fungi mirrors plant succession in two glacial chronosequences
Publication Title: Environmental Microbiology -
Description Culture population dynamics before and after 4‐chlorosalicylate biodegradation.
Article Title: Consortia modulation of the stress response: proteomic analysis of single strain versus mixed culture
Publication Title: Environmental Microbiology -
Description Temporal dynamics of specific enzymatic activities of surface prokaryotes (Sp, open circles) and bathypelagic prokaryotes (Bp, filled circles) inoculated in surface waters (SW, left panel), surface...
Article Title: Differential recruitment of opportunistic taxa leads to contrasting abilities in carbon processing by bathypelagic and surface microbial communities
Publication Title: Environmental Microbiology